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matvec::TransitionSet Class Reference

#include <gnodesetderived.h>

Inheritance diagram for matvec::TransitionSet:

matvec::GNodeSet List of all members.

Detailed Description

This is the "Transition set" class.

TransitionSet class has the methods that return transition probabilities (genotypes) for the proposal (the cascading origin trick of Matthias Schelling) and for the target

Definition at line 117 of file gnodesetderived.h.

Public Methods

double getValue (void)
double getTargetValue (void)
 ~TransitionSet (void)
bool incr (void)
void reset (void)
void attachMeToMyGnodes (void)
void display (void)
virtual double getOldValue (void)

Public Attributes

Individual * offspring
unsigned connectFlag
unsigned numberOfCuts

Static Public Attributes

int transmissionType = 1
GeneticDist * prior
unsigned currentLocus

Constructor & Destructor Documentation

matvec::TransitionSet::~TransitionSet (  void    )  [inline]
 

Definition at line 137 of file gnodesetderived.h. 

00137 {;}

Member Function Documentation

void matvec::GNodeSet::attachMeToMyGnodes (  void    )  [inherited]
 

Referenced by matvec::Population::initAlleleNodeList(), matvec::Population::initGenotypeNodeList(), and matvec::Population::initJointAlleleNodeList().

void matvec::GNodeSet::display (  void    )  [inherited]
 

virtual double matvec::GNodeSet::getOldValue (  void    )  [inline, virtual, inherited]
 

Reimplemented in matvec::CutSet.

Definition at line 125 of file gnodestuff.h. 

00125                                     {
00126       throw exception("GNodeSet::getOldValue(void): call for virtual function");
00127     };

double matvec::TransitionSet::getTargetValue (  void    )  [inline, virtual]
 

Reimplemented from matvec::GNodeSet.

Definition at line 134 of file gnodesetderived.h.

References matvec::Individual::getTransitionProb(). 

00134                                {
00135       return offspring->getTransitionProb();
00136     }

double matvec::TransitionSet::getValue (  void    )  [inline, virtual]
 

Reimplemented from matvec::GNodeSet.

Definition at line 121 of file gnodesetderived.h.

References matvec::Individual::getMatthiasTransitionProb(), and matvec::Individual::getTransitionProb(). 

00121                          {
00122       switch(transmissionType){
00123       case 1:
00124         return offspring->getTransitionProb();
00125         break;
00126       case 2:
00127         return offspring->getMatthiasTransitionProb();
00128         break;
00129       default:
00130         cerr << "Proposal type in TransitionSet getValue(void) is non-existent" << endl;
00131         break;
00132       }
00133     }

bool matvec::GNodeSet::incr (  void    )  [inherited]
 

Referenced by matvec::CutSet::operator *=(), matvec::CutSet::operator+=(), and matvec::CutSet::operator=().

void matvec::GNodeSet::reset (  void    )  [inherited]
 

Referenced by matvec::CutSet::operator *=(), matvec::CutSet::operator+=(), and matvec::CutSet::operator=().

Member Data Documentation

unsigned matvec::GNodeSet::connectFlag [inherited]
 

Definition at line 111 of file gnodestuff.h.

Referenced by matvec::CutSet::replaceMeWith().

unsigned matvec::GNodeSet::currentLocus [static, inherited]
 

Definition at line 43 of file gnodestuff.cpp.

Referenced by matvec::GenoFounderSet::getValue(), matvec::AlleleFounderSet::getValue(), and matvec::CutSet::replaceMeWith().

unsigned matvec::GNodeSet::numberOfCuts [inherited]
 

Definition at line 112 of file gnodestuff.h.

Referenced by matvec::CutSet::replaceMeWith().

Individual* matvec::TransitionSet::offspring
 

Definition at line 120 of file gnodesetderived.h.

Referenced by matvec::Population::initGenotypeNodeList().

GeneticDist * matvec::GNodeSet::prior [static, inherited]
 

Definition at line 42 of file gnodestuff.cpp.

Referenced by matvec::RAlleleFounderSet::getValue(), matvec::GenoFounderSet::getValue(), matvec::AlleleFounderSet::getValue(), and matvec::CutSet::replaceMeWith().

int matvec::TransitionSet::transmissionType = 1 [static]
 

Definition at line 48 of file gnodestuff.cpp.

The documentation for this class was generated from the following files:
Generated on Thu Jun 16 17:14:51 2005 for Matvec by doxygen1.2.16