Main Page   Namespace List   Class Hierarchy   Alphabetical List   Compound List   File List   Namespace Members   Compound Members   File Members  

matvec::RAlleleFounderSet Class Reference

#include <gnodesetderived.h>

Inheritance diagram for matvec::RAlleleFounderSet:

matvec::GNodeSet List of all members.

Detailed Description

This is the "RAllele Founder set" class.

AlleleFounderSet class has the method that returns founder probabilities for alleles when the locus passed as an argument.

Definition at line 207 of file gnodesetderived.h.

Public Methods

double getValue (void)
 ~RAlleleFounderSet (void)
bool incr (void)
void reset (void)
void attachMeToMyGnodes (void)
void display (void)
virtual double getTargetValue (void)
virtual double getOldValue (void)

Public Attributes

unsigned forLocus
unsigned connectFlag
unsigned numberOfCuts

Static Public Attributes

GeneticDist * prior
unsigned currentLocus

Constructor & Destructor Documentation

matvec::RAlleleFounderSet::~RAlleleFounderSet (  void    )  [inline]
 

Definition at line 216 of file gnodesetderived.h. 

00216 {;}

Member Function Documentation

void matvec::GNodeSet::attachMeToMyGnodes (  void    )  [inherited]
 

Referenced by matvec::Population::initAlleleNodeList(), matvec::Population::initGenotypeNodeList(), and matvec::Population::initJointAlleleNodeList().

void matvec::GNodeSet::display (  void    )  [inherited]
 

virtual double matvec::GNodeSet::getOldValue (  void    )  [inline, virtual, inherited]
 

Reimplemented in matvec::CutSet.

Definition at line 125 of file gnodestuff.h. 

00125                                     {
00126       throw exception("GNodeSet::getOldValue(void): call for virtual function");
00127     };

virtual double matvec::GNodeSet::getTargetValue (  void    )  [inline, virtual, inherited]
 

Reimplemented in matvec::TransitionSet.

Definition at line 122 of file gnodestuff.h. 

00122                                        {
00123       throw exception("GNodeSet::getTargetValue(void): call for virtual function");
00124     };

double matvec::RAlleleFounderSet::getValue (  void    )  [inline, virtual]
 

Reimplemented from matvec::GNodeSet.

Definition at line 210 of file gnodesetderived.h.

References matvec::GeneticDist::chrom(), forLocus, matvec::ChromStruct::locus, and matvec::GNodeSet::prior. 

00210                          {
00211       RAlleleFounderSet::iterator it;
00212       it = begin();
00213       unsigned allele = (*it)->getState();
00214       return prior->chrom()[0].locus[forLocus].allele_freq[allele];
00215     }

bool matvec::GNodeSet::incr (  void    )  [inherited]
 

Referenced by matvec::CutSet::operator *=(), matvec::CutSet::operator+=(), and matvec::CutSet::operator=().

void matvec::GNodeSet::reset (  void    )  [inherited]
 

Referenced by matvec::CutSet::operator *=(), matvec::CutSet::operator+=(), and matvec::CutSet::operator=().

Member Data Documentation

unsigned matvec::GNodeSet::connectFlag [inherited]
 

Definition at line 111 of file gnodestuff.h.

Referenced by matvec::CutSet::replaceMeWith().

unsigned matvec::GNodeSet::currentLocus [static, inherited]
 

Definition at line 43 of file gnodestuff.cpp.

Referenced by matvec::GenoFounderSet::getValue(), matvec::AlleleFounderSet::getValue(), and matvec::CutSet::replaceMeWith().

unsigned matvec::RAlleleFounderSet::forLocus
 

Definition at line 209 of file gnodesetderived.h.

Referenced by getValue(), and matvec::Population::initJointAlleleNodeList().

unsigned matvec::GNodeSet::numberOfCuts [inherited]
 

Definition at line 112 of file gnodestuff.h.

Referenced by matvec::CutSet::replaceMeWith().

GeneticDist * matvec::GNodeSet::prior [static, inherited]
 

Definition at line 42 of file gnodestuff.cpp.

Referenced by getValue(), matvec::GenoFounderSet::getValue(), matvec::AlleleFounderSet::getValue(), and matvec::CutSet::replaceMeWith().

The documentation for this class was generated from the following file:
Generated on Thu Jun 16 17:14:47 2005 for Matvec by doxygen1.2.16