Main Page   Namespace List   Class Hierarchy   Alphabetical List   Compound List   File List   Namespace Members   Compound Members   File Members  

matvec::GenoFounderSet Class Reference

#include <gnodesetderived.h>

Inheritance diagram for matvec::GenoFounderSet:

matvec::GNodeSet List of all members.

Detailed Description

This is the "Genotype Founder set" class.

GenoFounderSet class has the method that returns founder probabilities for genotypes

Definition at line 76 of file gnodesetderived.h.

Public Methods

double getValue (void)
 ~GenoFounderSet (void)
bool incr (void)
void reset (void)
void attachMeToMyGnodes (void)
void display (void)
virtual double getTargetValue (void)
virtual double getOldValue (void)

Public Attributes

unsigned connectFlag
unsigned numberOfCuts

Static Public Attributes

GeneticDist * prior
unsigned currentLocus

Constructor & Destructor Documentation

matvec::GenoFounderSet::~GenoFounderSet (  void    )  [inline]
 

Definition at line 87 of file gnodesetderived.h. 

00087 {;}

Member Function Documentation

void matvec::GNodeSet::attachMeToMyGnodes (  void    )  [inherited]
 

Referenced by matvec::Population::initAlleleNodeList(), matvec::Population::initGenotypeNodeList(), and matvec::Population::initJointAlleleNodeList().

void matvec::GNodeSet::display (  void    )  [inherited]
 

virtual double matvec::GNodeSet::getOldValue (  void    )  [inline, virtual, inherited]
 

Reimplemented in matvec::CutSet.

Definition at line 125 of file gnodestuff.h. 

00125                                     {
00126       throw exception("GNodeSet::getOldValue(void): call for virtual function");
00127     };

virtual double matvec::GNodeSet::getTargetValue (  void    )  [inline, virtual, inherited]
 

Reimplemented in matvec::TransitionSet.

Definition at line 122 of file gnodestuff.h. 

00122                                        {
00123       throw exception("GNodeSet::getTargetValue(void): call for virtual function");
00124     };

double matvec::GenoFounderSet::getValue (  void    )  [inline, virtual]
 

Reimplemented from matvec::GNodeSet.

Definition at line 78 of file gnodesetderived.h.

References matvec::GeneticDist::chrom(), matvec::GNodeSet::currentLocus, matvec::ChromStruct::locus, and matvec::GNodeSet::prior. 

00078                          {
00079       GenoFounderSet::iterator it;
00080       it = begin();
00081       unsigned mallele = (*it)->getmState();
00082       unsigned pallele = (*it)->getpState();
00083       double pm = prior->chrom()[0].locus[currentLocus].allele_freq[mallele];
00084       double pp = prior->chrom()[0].locus[currentLocus].allele_freq[pallele];
00085       return pm*pp;
00086     }

bool matvec::GNodeSet::incr (  void    )  [inherited]
 

Referenced by matvec::CutSet::operator *=(), matvec::CutSet::operator+=(), and matvec::CutSet::operator=().

void matvec::GNodeSet::reset (  void    )  [inherited]
 

Referenced by matvec::CutSet::operator *=(), matvec::CutSet::operator+=(), and matvec::CutSet::operator=().

Member Data Documentation

unsigned matvec::GNodeSet::connectFlag [inherited]
 

Definition at line 111 of file gnodestuff.h.

Referenced by matvec::CutSet::replaceMeWith().

unsigned matvec::GNodeSet::currentLocus [static, inherited]
 

Definition at line 43 of file gnodestuff.cpp.

Referenced by getValue(), matvec::AlleleFounderSet::getValue(), and matvec::CutSet::replaceMeWith().

unsigned matvec::GNodeSet::numberOfCuts [inherited]
 

Definition at line 112 of file gnodestuff.h.

Referenced by matvec::CutSet::replaceMeWith().

GeneticDist * matvec::GNodeSet::prior [static, inherited]
 

Definition at line 42 of file gnodestuff.cpp.

Referenced by matvec::RAlleleFounderSet::getValue(), getValue(), matvec::AlleleFounderSet::getValue(), and matvec::CutSet::replaceMeWith().

The documentation for this class was generated from the following file:
Generated on Thu Jun 16 17:14:22 2005 for Matvec by doxygen1.2.16