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matvec::DisAllelePenetranceSet Class Reference

#include <gnodesetderived.h>

Inheritance diagram for matvec::DisAllelePenetranceSet:

matvec::GNodeSet List of all members.

Detailed Description

This is the "Disease Allele penetrance set" class.

DisAllelePenetranceSet class has the method that calculates the penetrance function for a recessive disease trait in allelic peeling

Definition at line 192 of file gnodesetderived.h.

Public Methods

double getValue (void)
 ~DisAllelePenetranceSet (void)
bool incr (void)
void reset (void)
void attachMeToMyGnodes (void)
void display (void)
virtual double getTargetValue (void)
virtual double getOldValue (void)

Public Attributes

Individual * owner
unsigned connectFlag
unsigned numberOfCuts

Static Public Attributes

GeneticDist * prior
unsigned currentLocus

Constructor & Destructor Documentation

matvec::DisAllelePenetranceSet::~DisAllelePenetranceSet (  void    )  [inline]
 

Definition at line 198 of file gnodesetderived.h. 

00198 {;}

Member Function Documentation

void matvec::GNodeSet::attachMeToMyGnodes (  void    )  [inherited]
 

Referenced by matvec::Population::initAlleleNodeList(), matvec::Population::initGenotypeNodeList(), and matvec::Population::initJointAlleleNodeList().

void matvec::GNodeSet::display (  void    )  [inherited]
 

virtual double matvec::GNodeSet::getOldValue (  void    )  [inline, virtual, inherited]
 

Reimplemented in matvec::CutSet.

Definition at line 125 of file gnodestuff.h. 

00125                                     {
00126       throw exception("GNodeSet::getOldValue(void): call for virtual function");
00127     };

virtual double matvec::GNodeSet::getTargetValue (  void    )  [inline, virtual, inherited]
 

Reimplemented in matvec::TransitionSet.

Definition at line 122 of file gnodestuff.h. 

00122                                        {
00123       throw exception("GNodeSet::getTargetValue(void): call for virtual function");
00124     };

double matvec::DisAllelePenetranceSet::getValue (  void    )  [inline, virtual]
 

Reimplemented from matvec::GNodeSet.

Definition at line 195 of file gnodesetderived.h.

References matvec::Individual::getDisAllelePenetrance(). 

00195                          {
00196       return owner->getDisAllelePenetrance();
00197     }

bool matvec::GNodeSet::incr (  void    )  [inherited]
 

Referenced by matvec::CutSet::operator *=(), matvec::CutSet::operator+=(), and matvec::CutSet::operator=().

void matvec::GNodeSet::reset (  void    )  [inherited]
 

Referenced by matvec::CutSet::operator *=(), matvec::CutSet::operator+=(), and matvec::CutSet::operator=().

Member Data Documentation

unsigned matvec::GNodeSet::connectFlag [inherited]
 

Definition at line 111 of file gnodestuff.h.

Referenced by matvec::CutSet::replaceMeWith().

unsigned matvec::GNodeSet::currentLocus [static, inherited]
 

Definition at line 43 of file gnodestuff.cpp.

Referenced by matvec::GenoFounderSet::getValue(), matvec::AlleleFounderSet::getValue(), and matvec::CutSet::replaceMeWith().

unsigned matvec::GNodeSet::numberOfCuts [inherited]
 

Definition at line 112 of file gnodestuff.h.

Referenced by matvec::CutSet::replaceMeWith().

Individual* matvec::DisAllelePenetranceSet::owner
 

Definition at line 194 of file gnodesetderived.h.

Referenced by matvec::Population::initAlleleNodeList().

GeneticDist * matvec::GNodeSet::prior [static, inherited]
 

Definition at line 42 of file gnodestuff.cpp.

Referenced by matvec::RAlleleFounderSet::getValue(), matvec::GenoFounderSet::getValue(), matvec::AlleleFounderSet::getValue(), and matvec::CutSet::replaceMeWith().

The documentation for this class was generated from the following file:
Generated on Thu Jun 16 17:14:19 2005 for Matvec by doxygen1.2.16