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matvec::AlleleFounderSet Class Reference

#include <gnodesetderived.h>

Inheritance diagram for matvec::AlleleFounderSet:

matvec::GNodeSet List of all members.

Detailed Description

This is the "Allele Founder set" class.

AlleleFounderSet class has the method that returns founder probabilities for alleles

Definition at line 59 of file gnodesetderived.h.

Public Methods

double getValue (void)
 ~AlleleFounderSet (void)
bool incr (void)
void reset (void)
void attachMeToMyGnodes (void)
void display (void)
virtual double getTargetValue (void)
virtual double getOldValue (void)

Public Attributes

unsigned connectFlag
unsigned numberOfCuts

Static Public Attributes

GeneticDist * prior
unsigned currentLocus

Constructor & Destructor Documentation

matvec::AlleleFounderSet::~AlleleFounderSet (  void    )  [inline]
 

Definition at line 67 of file gnodesetderived.h. 

00067 {;}

Member Function Documentation

void matvec::GNodeSet::attachMeToMyGnodes (  void    )  [inherited]
 

Referenced by matvec::Population::initAlleleNodeList(), matvec::Population::initGenotypeNodeList(), and matvec::Population::initJointAlleleNodeList().

void matvec::GNodeSet::display (  void    )  [inherited]
 

virtual double matvec::GNodeSet::getOldValue (  void    )  [inline, virtual, inherited]
 

Reimplemented in matvec::CutSet.

Definition at line 125 of file gnodestuff.h. 

00125                                     {
00126       throw exception("GNodeSet::getOldValue(void): call for virtual function");
00127     };

virtual double matvec::GNodeSet::getTargetValue (  void    )  [inline, virtual, inherited]
 

Reimplemented in matvec::TransitionSet.

Definition at line 122 of file gnodestuff.h. 

00122                                        {
00123       throw exception("GNodeSet::getTargetValue(void): call for virtual function");
00124     };

double matvec::AlleleFounderSet::getValue (  void    )  [inline, virtual]
 

Reimplemented from matvec::GNodeSet.

Definition at line 61 of file gnodesetderived.h.

References matvec::GeneticDist::chrom(), matvec::GNodeSet::currentLocus, matvec::ChromStruct::locus, and matvec::GNodeSet::prior. 

00061                          {
00062       AlleleFounderSet::iterator it;
00063       it = begin();
00064       unsigned allele = (*it)->getState();
00065       return prior->chrom()[0].locus[currentLocus].allele_freq[allele];
00066     }

bool matvec::GNodeSet::incr (  void    )  [inherited]
 

Referenced by matvec::CutSet::operator *=(), matvec::CutSet::operator+=(), and matvec::CutSet::operator=().

void matvec::GNodeSet::reset (  void    )  [inherited]
 

Referenced by matvec::CutSet::operator *=(), matvec::CutSet::operator+=(), and matvec::CutSet::operator=().

Member Data Documentation

unsigned matvec::GNodeSet::connectFlag [inherited]
 

Definition at line 111 of file gnodestuff.h.

Referenced by matvec::CutSet::replaceMeWith().

unsigned matvec::GNodeSet::currentLocus [static, inherited]
 

Definition at line 43 of file gnodestuff.cpp.

Referenced by matvec::GenoFounderSet::getValue(), getValue(), and matvec::CutSet::replaceMeWith().

unsigned matvec::GNodeSet::numberOfCuts [inherited]
 

Definition at line 112 of file gnodestuff.h.

Referenced by matvec::CutSet::replaceMeWith().

GeneticDist * matvec::GNodeSet::prior [static, inherited]
 

Definition at line 42 of file gnodestuff.cpp.

Referenced by matvec::RAlleleFounderSet::getValue(), matvec::GenoFounderSet::getValue(), getValue(), and matvec::CutSet::replaceMeWith().

The documentation for this class was generated from the following file:
Generated on Thu Jun 16 17:14:15 2005 for Matvec by doxygen1.2.16